2022

Dolcemascolo, R., Goiriz, L., Montagud-Martínez, R., Rodrigo, G. Gene regulation by a protein translation factor at the single-cell level. PLOS Computational Biology, 18(5): e1010087. DOI: 10.1371/journal.pcbi.1010087

  • Protein translation
  • Gene expression
  • Gene regulation
  • Transcriptional control
  • Post-transcriptional gene regulation
  • Protein synthesis
  • Mathematical models
  • mRNA

2021

Kagami, L.P., Orlando, G., Raimondi, D., Ancien, F., Dixit, B., Gavaldá-García, J., Ramasamy, P., Roca-Martínez, J., Tzavella, K., Vranken, W.F. b2bTools: online predictions for protein biophysical features and their conservation. Nucleic Acids Res., gkab425 (2021). DOI: 10.1093/nar/gkab425

  • Protein
  • Sequence based predictions
  • Biophysics
  • Machine learning
  • Conservation

Kagami, L., Roca-Martínez, J., Gavaldá-García, J., Ramasamy, P., Feenstra, K.A., Vranken, W.F. Online biophysical predictions for SARS-CoV-2 proteins. BMC Mol and Cell Biol 22, 23 (2021). DOI: 10.1186/s12860-021-00362-w

  • Proteins
  • Single sequence based predictions
  • Biophysical features
  • SARS-CoV-2
  • COVID-19